{
  "_id": "6a12c7b9acfb0bcc41d20732",
  "Package": "valorate",
  "Version": "1.0-5",
  "Date": "2025-03-26",
  "Title": "Velocity and Accuracy of the LOg-RAnk TEst",
  "Authors@R": "c(person(\"Victor\", \"Trevino\", role = c(\"aut\", \"cre\"),\nemail = \"vtrevino@itesm.mx\"))",
  "Author": "Victor Trevino [aut, cre]",
  "Maintainer": "Victor Trevino <vtrevino@itesm.mx>",
  "Description": "The algorithm implemented in this package was designed to\nquickly estimates the distribution of the log-rank especially\nfor heavy unbalanced groups. VALORATE estimates the null\ndistribution and the p-value of the log-rank test based on a\nrecent formulation. For a given number of alterations that\ndefine the size of survival groups, the estimation involves a\nweighted sum of distributions that are conditional on a\nco-occurrence term where mutations and events are both present.\nThe estimation of conditional distributions is quite fast\nallowing the analysis of large datasets in few minutes\n<https://bioinformatics.mx/index.php/bioinfo-tools/>.",
  "License": "GPL (>= 2)",
  "URL": "https://bioinformatics.mx/index.php/bioinfo-tools/",
  "NeedsCompilation": "yes",
  "Packaged": {
    "Date": "2026-05-24 09:36:25 UTC",
    "User": "root"
  },
  "Repository": "https://vtrevino.r-universe.dev",
  "Date/Publication": "2025-03-27 04:00:03 UTC",
  "RemoteUrl": "https://github.com/cran/valorate",
  "RemoteRef": "HEAD",
  "RemoteSha": "38add12d029d4b2189722c155f2edecf1d81daff",
  "MD5sum": "f24a5838d3289147e710fed97b8c30ab",
  "_user": "vtrevino",
  "_type": "src",
  "_file": "valorate_1.0-5.tar.gz",
  "_fileid": "ff19ac80c1b8a69a5bec5a1bd68215c2da3534356761804ac32db44c51ffc1b1",
  "_filesize": 159842,
  "_sha256": "ff19ac80c1b8a69a5bec5a1bd68215c2da3534356761804ac32db44c51ffc1b1",
  "_created": "2026-05-24T09:36:25.000Z",
  "_published": "2026-05-24T09:41:13.680Z",
  "_distro": "noble",
  "_jobs": [
    {
      "job": 77587495548,
      "time": 174,
      "config": "linux-devel-arm64",
      "r": "4.7.0",
      "check": "OK",
      "artifact": "7184091946"
    },
    {
      "job": 77587495551,
      "time": 144,
      "config": "linux-devel-x86_64",
      "r": "4.7.0",
      "check": "OK",
      "artifact": "7184088879"
    },
    {
      "job": 77587495554,
      "time": 120,
      "config": "linux-release-arm64",
      "r": "4.6.0",
      "check": "OK",
      "artifact": "7184086348"
    },
    {
      "job": 77587495550,
      "time": 121,
      "config": "linux-release-x86_64",
      "r": "4.6.0",
      "check": "OK",
      "artifact": "7184086545"
    },
    {
      "job": 77587495555,
      "time": 99,
      "config": "macos-oldrel-arm64",
      "r": "4.5.3",
      "check": "OK",
      "artifact": "7184084302"
    },
    {
      "job": 77587495552,
      "time": 188,
      "config": "macos-oldrel-x86_64",
      "r": "4.5.3",
      "check": "OK",
      "artifact": "7184093583"
    },
    {
      "job": 77587495564,
      "time": 104,
      "config": "macos-release-arm64",
      "r": "4.6.0",
      "check": "OK",
      "artifact": "7184084812"
    },
    {
      "job": 77587495556,
      "time": 252,
      "config": "macos-release-x86_64",
      "r": "4.6.0",
      "check": "OK",
      "artifact": "7184100295"
    },
    {
      "job": 77587360599,
      "time": 144,
      "config": "source",
      "r": "4.6.0",
      "check": "OK",
      "artifact": "7184073788"
    },
    {
      "job": 77587495531,
      "time": 91,
      "config": "wasm-release",
      "r": "4.6.0",
      "check": "OK",
      "artifact": "7184083551"
    },
    {
      "job": 77587495549,
      "time": 101,
      "config": "windows-devel",
      "r": "4.7.0",
      "check": "OK",
      "artifact": "7184084412"
    },
    {
      "job": 77587495558,
      "time": 118,
      "config": "windows-oldrel",
      "r": "4.5.3",
      "check": "OK",
      "artifact": "7184086221"
    },
    {
      "job": 77587495553,
      "time": 83,
      "config": "windows-release",
      "r": "4.6.0",
      "check": "OK",
      "artifact": "7184082693"
    }
  ],
  "_buildurl": "https://github.com/r-universe/vtrevino/actions/runs/26357699987",
  "_status": "success",
  "_host": "GitHub-Actions",
  "_upstream": "https://github.com/cran/valorate",
  "_commit": {
    "id": "38add12d029d4b2189722c155f2edecf1d81daff",
    "author": "Victor Trevino <vtrevino@itesm.mx>",
    "committer": "cran-robot <csardi.gabor+cran@gmail.com>",
    "message": "version 1.0-5\n",
    "time": 1743048003
  },
  "_maintainer": {
    "name": "Victor Trevino",
    "email": "vtrevino@itesm.mx",
    "login": "vtrevino",
    "description": "",
    "uuid": 13750843
  },
  "_registered": true,
  "_dependencies": [
    {
      "package": "R",
      "version": ">= 3.1.0",
      "role": "Depends"
    },
    {
      "package": "methods",
      "role": "Depends"
    },
    {
      "package": "survival",
      "role": "Imports"
    },
    {
      "package": "graphics",
      "role": "Imports"
    },
    {
      "package": "utils",
      "role": "Imports"
    },
    {
      "package": "stats",
      "role": "Imports"
    }
  ],
  "_owner": "cran",
  "_selfowned": true,
  "_usedby": 0,
  "_updates": [],
  "_tags": [],
  "_stars": 0,
  "_contributors": [
    {
      "user": "vtrevino",
      "count": 3,
      "uuid": 13750843
    }
  ],
  "_userbio": {
    "uuid": 13750843,
    "type": "user",
    "name": "vtrevino"
  },
  "_downloads": {
    "count": 197,
    "source": "https://cranlogs.r-pkg.org/downloads/total/last-month/valorate"
  },
  "_searchresults": 9,
  "_rbuild": "4.6.0",
  "_assets": [
    "extra/citation.cff",
    "extra/citation.html",
    "extra/citation.json",
    "extra/citation.txt",
    "extra/contents.json",
    "extra/valorate.html",
    "manual.pdf"
  ],
  "_realowner": "vtrevino",
  "_cranurl": false,
  "_releases": [
    {
      "version": "1.0-0",
      "date": "2016-10-03"
    },
    {
      "version": "1.0-1",
      "date": "2016-10-09"
    },
    {
      "version": "1.0-5",
      "date": "2025-03-27"
    }
  ],
  "_exports": [
    "new.valorate",
    "prepare.n1",
    "valorate.estimate.beta.parameters",
    "valorate.estimate.weibull.parameters",
    "valorate.p.value.all",
    "valorate.p.value.beta",
    "valorate.p.value.chisq",
    "valorate.p.value.gaussian",
    "valorate.p.value.normal",
    "valorate.p.value.sampling",
    "valorate.p.value.weibull",
    "valorate.plot.diff.empirical",
    "valorate.plot.empirical",
    "valorate.plot.kaplan",
    "valorate.plot.sampling.densities",
    "valorate.plot.sampling.densities.figure",
    "valorate.plot.subpop.empirical",
    "valorate.plot.subpop.empirical.scaled",
    "valorate.plot.subpop.empirical.to.0",
    "valorate.psurvdiff",
    "valorate.random.n1",
    "valorate.risk",
    "valorate.survdiff"
  ],
  "_help": [
    {
      "page": "New_Valorate",
      "title": "CREATE A VALORATE OBJECT",
      "topics": [
        "new.valorate",
        "valorate"
      ]
    },
    {
      "page": "prepare.n1",
      "title": "ESTIMATES THE LOG-RANK DISTRIBUTION AND STORE IT WITHIN A VALORATE OBJECT",
      "topics": [
        "prepare.n1"
      ]
    },
    {
      "page": "valorate.p.value",
      "title": "ESTIMATES THE P-VALUE OF THE LOG-RANK TEST",
      "topics": [
        "valorate.p.value",
        "valorate.p.value.all",
        "valorate.p.value.beta",
        "valorate.p.value.chisq",
        "valorate.p.value.gaussian",
        "valorate.p.value.normal",
        "valorate.p.value.sampling",
        "valorate.p.value.weibull"
      ]
    },
    {
      "page": "valorate.plot.empirical",
      "title": "PLOT THE SAMPLED (EMPIRICAL) LOG-RANK DISTRIBUTION",
      "topics": [
        "valorate.plot.empirical"
      ]
    },
    {
      "page": "valorate.plot.kaplan",
      "title": "PLOT KAPLAN-MEIER CURVES",
      "topics": [
        "valorate.plot.kaplan"
      ]
    },
    {
      "page": "valorate.plot.sampling.densities",
      "title": "PLOT CO-OCCURRENCE DENSITIES FORMING A LOG-RANK DISTRIBUTION",
      "topics": [
        "valorate.plot.sampling.densities",
        "valorate.plot.sampling.densities.figure"
      ]
    },
    {
      "page": "valorate.plot.subpop",
      "title": "PLOT ALL ESTIMATED LOG-RANK DISTRIBUTIONS",
      "topics": [
        "valorate.plot.subpop.",
        "valorate.plot.subpop.empirical",
        "valorate.plot.subpop.empirical.scaled",
        "valorate.plot.subpop.empirical.to.0"
      ]
    },
    {
      "page": "valorate.random.n1",
      "title": "ESTIMATES THE LOG-RANK DISTRIBUTION OF RANDOM VECTORS",
      "topics": [
        "valorate.random.n1"
      ]
    },
    {
      "page": "valorate.risk",
      "title": "ESTIMATES RISK",
      "topics": [
        "valorate.risk"
      ]
    },
    {
      "page": "valorate.survdiff",
      "title": "ESTIMATES THE P-VALUE AND STATISTICS OF THE LOG-RANK TEST",
      "topics": [
        "valorate.survdiff"
      ]
    }
  ],
  "_rundeps": [
    "lattice",
    "Matrix",
    "survival"
  ],
  "_score": 1,
  "_indexed": true,
  "_nocasepkg": "valorate",
  "_universes": [
    "vtrevino"
  ],
  "_binaries": [
    {
      "r": "4.7.0",
      "os": "linux",
      "version": "1.0-5",
      "date": "2026-05-24T09:39:13.000Z",
      "distro": "noble",
      "arch": "aarch64",
      "commit": "38add12d029d4b2189722c155f2edecf1d81daff",
      "fileid": "9f26f27c56d06d43d4c05d25c7d9d4c0d7d8109a7899b535ce0a15c39bde41d0",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/vtrevino/actions/runs/26357699987"
    },
    {
      "r": "4.7.0",
      "os": "linux",
      "version": "1.0-5",
      "date": "2026-05-24T09:38:38.000Z",
      "distro": "noble",
      "arch": "x86_64",
      "commit": "38add12d029d4b2189722c155f2edecf1d81daff",
      "fileid": "eb4b72a13e9b3cfa85b2c59c614e835547fb59a4eb27f69f148619fce738be0d",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/vtrevino/actions/runs/26357699987"
    },
    {
      "r": "4.6.0",
      "os": "linux",
      "version": "1.0-5",
      "date": "2026-05-24T09:38:22.000Z",
      "distro": "noble",
      "arch": "aarch64",
      "commit": "38add12d029d4b2189722c155f2edecf1d81daff",
      "fileid": "459d79c3b853035afec8829faa2d0cf5691a4202a488885064e763299d92afbf",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/vtrevino/actions/runs/26357699987"
    },
    {
      "r": "4.6.0",
      "os": "linux",
      "version": "1.0-5",
      "date": "2026-05-24T09:38:17.000Z",
      "distro": "noble",
      "arch": "x86_64",
      "commit": "38add12d029d4b2189722c155f2edecf1d81daff",
      "fileid": "f7172ed49ec26a5fff5cb77790576035b0b669a67c70dc7950a1fd6c4b1d02c8",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/vtrevino/actions/runs/26357699987"
    },
    {
      "r": "4.5.3",
      "os": "mac",
      "version": "1.0-5",
      "date": "2026-05-24T09:38:02.000Z",
      "arch": "aarch64",
      "commit": "38add12d029d4b2189722c155f2edecf1d81daff",
      "fileid": "069a913b84f48d4d71ebba8ecd6063d2e94fc4b43ed4873992fd57c60d5ea946",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/vtrevino/actions/runs/26357699987"
    },
    {
      "r": "4.5.3",
      "os": "mac",
      "version": "1.0-5",
      "date": "2026-05-24T09:39:02.000Z",
      "arch": "x86_64",
      "commit": "38add12d029d4b2189722c155f2edecf1d81daff",
      "fileid": "0fd278f3c041da361600a7cf57e167a7603001deeda15f417f921fd337bb9df6",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/vtrevino/actions/runs/26357699987"
    },
    {
      "r": "4.6.0",
      "os": "mac",
      "version": "1.0-5",
      "date": "2026-05-24T09:38:08.000Z",
      "arch": "aarch64",
      "commit": "38add12d029d4b2189722c155f2edecf1d81daff",
      "fileid": "09f1bace1850d39a5c1c1add3a4d3130e67691e8dff0c4ede28060c23b1808bc",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/vtrevino/actions/runs/26357699987"
    },
    {
      "r": "4.6.0",
      "os": "mac",
      "version": "1.0-5",
      "date": "2026-05-24T09:39:49.000Z",
      "arch": "x86_64",
      "commit": "38add12d029d4b2189722c155f2edecf1d81daff",
      "fileid": "fc25d950bf5707bb2b8387eee520618713b35996e1c9e8a65209b811c0889020",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/vtrevino/actions/runs/26357699987"
    },
    {
      "r": "4.6.0",
      "os": "wasm",
      "version": "1.0-5",
      "date": "2026-05-24T09:38:18.000Z",
      "arch": "emscripten",
      "commit": "38add12d029d4b2189722c155f2edecf1d81daff",
      "fileid": "3ae6408b86e938b0faee6d61c519ed9fd9b521043b5474c1b033b03b6b64b1d3",
      "status": "success",
      "buildurl": "https://github.com/r-universe/vtrevino/actions/runs/26357699987"
    },
    {
      "r": "4.7.0",
      "os": "win",
      "version": "1.0-5",
      "date": "2026-05-24T09:37:43.000Z",
      "arch": "x86_64",
      "commit": "38add12d029d4b2189722c155f2edecf1d81daff",
      "fileid": "cfce9a3613256026c138bc0c8ede57efaf1395f8ad43f39dbc60c960c298288b",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/vtrevino/actions/runs/26357699987"
    },
    {
      "r": "4.5.3",
      "os": "win",
      "version": "1.0-5",
      "date": "2026-05-24T09:37:55.000Z",
      "arch": "x86_64",
      "commit": "38add12d029d4b2189722c155f2edecf1d81daff",
      "fileid": "02458c8bb4e080d3eea9e98f344f43a846e6d88cf9e7716df2968b917e03034d",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/vtrevino/actions/runs/26357699987"
    },
    {
      "r": "4.6.0",
      "os": "win",
      "version": "1.0-5",
      "date": "2026-05-24T09:37:35.000Z",
      "arch": "x86_64",
      "commit": "38add12d029d4b2189722c155f2edecf1d81daff",
      "fileid": "30d670d231ee4f987773cdfc9549f63aab0ed14596294ab5903d5e37efb931f5",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/vtrevino/actions/runs/26357699987"
    }
  ]
}